miniEugene
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miniEugene
Constraint-based Design of Synthetic Biological Systems
Updates
:
12/19/2014
miniEugene has been published:
DOI:10.1021/sb500352b
05/02/2014
Improved Pigeon Visualization
50,000 Solutions max.
04/13/2014
EQUALS rule updated
Bug Fixes
04/07/2014
Templating Constraints
WITH rule updated
04/06/2014
DRIVES rule updated
03/31/2014
XML-RPC Web Service
03/26/2014
SAME_COUNT
SAME_ORIENTATION
ALTERNATE_ORIENTATION
Conjunctive normal form
Length of the Design:
Solve
// COUNTING CONSTRAINTS CONTAINS p1 CONTAINS c1 CONTAINS p2 CONTAINS c2 CONTAINS cReporter // POSITIONING CONSTRAINTS c1 BEFORE p2 p2 BEFORE p1 p1 BEFORE c2 cReporter AFTER c2 // ORIENTATION CONSTRAINTS REVERSE c1 REVERSE p2 FORWARD p1 FORWARD c2 FORWARD cReporter // SPECIFICATION OF INTERACTIONS c1 REPRESSES p1 c2 REPRESSES p2
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